FastQCFastQC Report
Wed 8 May 2024
EGAF00007960095

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960095
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458590
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10290.22438343618482742No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10290.22438343618482742No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8960.19538149545345515No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8870.19341895811073073No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6790.1480625395233215No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6750.14719030070433284No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6490.1415207483809067No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5720.12473015111537537No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5720.12473015111537537No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5490.11971477790619071No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5430.11840641967770776No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5280.11513552410650037No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5150.11230074794478728No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5120.1116465688305458No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5080.11077433001155718No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4890.10663119562136113No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4880.10641313591661396No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4860.10597701650711966No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)