FastQCFastQC Report
Wed 8 May 2024
EGAF00007960097

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960097
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435203
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39100.8984313067694846No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11270.25895961195120437No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8560.1966898206124498No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7980.18336270659898943No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6200.14246225324733516No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6200.14246225324733516No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5860.13464980710151353No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5620.12913513923387476No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5250.12063335960459831No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4880.11213157997532186No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4860.11167202431968529No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4680.10753602341895621No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4620.10615735645204652No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4620.10615735645204652No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4550.10454891165731856No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4540.10431913382950027No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4510.10362980034604541No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4480.10294046686259055No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4430.10179157772349916No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)