FastQCFastQC Report
Wed 8 May 2024
EGAF00007960098

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960098
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448993
Total Bases19.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14340.31938137120177823No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9060.2017848830605377No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6650.14810921328394874No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6030.13430053475221218No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5850.13029156356557897No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5650.12583715113598654No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5070.11291935509016844No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4870.108464942660576No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4510.1004470002873096No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)