FastQCFastQC Report
Wed 8 May 2024
EGAF00007960099

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960099
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448993
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13650.3040136483196843No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9720.21648444407819273No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9170.20423480989681353No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8400.1870853220428826No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6550.14588200706915253No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6390.14231847712547857No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6320.1407594327751212No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5790.12895523983670124No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5780.1287325192152216No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5370.11960097373455711No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5170.11514656130496466No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5040.11225119322572957No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4870.108464942660576No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT4650.10356508898802433No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4560.10156060339470772No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)