FastQCFastQC Report
Wed 8 May 2024
EGAF00007960101

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960101
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424762
Total Bases13.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40390.9508854370212025No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13320.313587373635118No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9250.21776900946883196No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7020.16526902124012977No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6640.15632283490519397No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5930.139607592016235No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5810.13678248054204473No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5770.13584077671731465No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5390.12689459038237885No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5110.12030266360926825No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4760.11206275514288001No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4660.1097084955810548No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4470.1052354024135869No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4380.1031165688079442No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)