FastQCFastQC Report
Wed 8 May 2024
EGAF00007960103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453884
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14960.32959963338650405No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10370.22847247314291755No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8810.19410245789673133No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7820.1722907174520362No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7030.1548853892183906No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6620.14585224418573908No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6300.13880198464805987No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5900.12998916022596083No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5830.12844691595209348No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5420.11941377091944196No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5150.11346511443452512No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5020.11060094649734294No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4900.10795709917071322No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4870.1072961373390558No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4800.10575389306518845No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)