FastQCFastQC Report
Wed 8 May 2024
EGAF00007960105

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960105
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430069
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37570.8735807509957705No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13750.31971613857311265No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9360.2176394950577698No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7210.16764751702633762No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6870.15974180887252976No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6130.14253526759659496No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6010.1397450176599569No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5800.13486208027084026No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5530.1285840179134046No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4940.1148652890582674No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4810.11184251829357615No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4760.11067991415331029No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4740.11021487249720392No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4590.10672706007640634No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)