FastQCFastQC Report
Wed 8 May 2024
EGAF00007960106

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960106
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447863
Total Bases19.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8310.18554781261233905No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6750.15071573226634036No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6630.14803634147049433No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6470.14446382040936626No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6440.14379397271040473No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG6150.13731877828711012No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5700.12727106280268743No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5660.12637793253740542No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5600.1250382371394824No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5340.11923289041514927No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5170.1154370867877007No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5010.11186456572657263No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4810.10739891440016255No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4620.10315654564007296No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4480.10003058971158592No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)