FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007960107

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960107
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447863
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA9080.20274057021901787No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8570.19135315933667213No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8210.18331498694913398No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7210.16098673031708358No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6980.15585123129171197No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6950.15518138359275047No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6630.14803634147049433No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6570.1466966460725713No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6520.14558023324096878No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6180.13798862598607164No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6080.13575580032286658No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5890.131513431562777No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC5860.1308435838638155No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5630.1257080848384439No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5540.12369854174155935No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5080.11342754369081617No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5010.11186456572657263No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4730.1056126538695985No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4660.104049675905355No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4520.10092371997686793No Hit

[OK]Adapter Content

Adapter graph