FastQCFastQC Report
Wed 8 May 2024
EGAF00007960109

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960109
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422829
Total Bases13.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40800.9649290848073335No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8530.20173639934819987No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7820.18494474125473892No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6550.15490895846784397No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6380.1508884206144801No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6370.15065191838781164No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5980.1414283315477415No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5950.14071882486773613No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5930.1402458204143992No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5850.13835380260105148No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5760.1362252825610353No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5680.1343332647476876No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC5290.1251096779076175No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5190.12274465564093287No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5120.12108914005425361No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4850.11470357993420509No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4760.1125750598941889No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC4670.11044653985417272No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4390.10382447750745573No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)