FastQCFastQC Report
Wed 8 May 2024
EGAF00007960110

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960110
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452640
Total Bases19.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8330.1840314598798162No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7130.15752032520325204No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6680.14757864969954046No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6630.14647401908801697No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6440.14227642276422764No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG6270.13852067868504772No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6130.13542771297278192No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6000.1325556733828208No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5930.13100919052668789No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5190.11466065747613999No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4950.10935843054082714No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4920.10869565217391304No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC4870.10759102156238953No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4730.10449805585012373No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4560.10074231177094381No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)