FastQCFastQC Report
Wed 8 May 2024
EGAF00007960111

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960111
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452640
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA9800.2165075998586073No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8510.18800813008130082No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8270.18270590314598797No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7220.15950866030399435No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7210.15928773418168962No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6950.1535436550017674No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6790.15000883704489218No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6650.14691587133262637No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6600.14581124072110288No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6450.14249734888653234No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6220.1374160480735242No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5970.1318928950159067No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC5790.12791622481442205No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5440.1201838105337575No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5110.11289324849770237No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC4910.10847472605160834No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4860.10737009544008484No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4810.10626546482856132No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4790.10582361258395193No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4730.10449805585012373No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4620.10206786850477201No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4550.10052138564863909No Hit

[OK]Adapter Content

Adapter graph