FastQCFastQC Report
Wed 8 May 2024
EGAF00007960112

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960112
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427673
Total Bases18.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7890.18448674571459972No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6500.1519852784721037No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6500.1519852784721037No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5830.13631910361420993No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG5770.13491616258215974No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5550.12977204546464238No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5480.1281352809272505No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5230.12228969329370805No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5110.11948381122960766No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5010.11714557617619069No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC4950.11574263514414052No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4550.1063896949304726No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT4490.1049867538984224No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4420.10334998936103051No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4400.10288234235034711No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4360.10194704832898031No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4320.10101175430761353No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)