FastQCFastQC Report
Wed 8 May 2024
EGAF00007960113

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960113
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427673
Total Bases13.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36610.8560278530559563No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8660.20249115562591047No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7680.17957645210242404No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6950.1625073362124801No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6490.151751454966762No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6110.14286616176377745No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6040.14122939722638558No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5990.14006027969967708No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5800.1356176330981848No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5720.13374704505545124No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5670.13257792752874276No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC5400.12626469288451692No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5260.12299116380973314No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC4960.11597645864948221No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4830.11293675308004013No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4790.11200145905867333No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4770.11153381204798993No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4650.10872792998388957No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4400.10288234235034711No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)