FastQCFastQC Report
Wed 8 May 2024
EGAF00007960116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418656
Total Bases18.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20980.5011274172590384No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18370.4387850645876328No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11320.2703890544982038No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11190.2672838798440724No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11000.26274554765726515No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9320.22261713674233738No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8250.19705916074294885No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7620.18201100664985095No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7470.17842811281816096No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7230.17269548268745702No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7060.16863486967820837No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6150.14689864709928915No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6130.14642092792173048No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5730.1368665443705572No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5720.13662768478177786No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5560.13280593136130858No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5440.1299396162959566No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5400.12898417794083925No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5340.12755102040816327No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5020.11990751356722464No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4980.11895207521210732No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4950.11823549644576932No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4800.11465260261407935No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA4740.11321944508140334No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4730.11298058549262402No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG4680.11178628754872734No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4570.10915883207215471No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4370.10438164029656807No Hit
CGCCGGAACTTCTTTAGAGTGAGCTGGACCGGATGCTTTAGTGT4280.10223190399755407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)