FastQCFastQC Report
Wed 8 May 2024
EGAF00007960117

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960117
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418656
Total Bases12.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44741.0686578001987312No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39140.9348964304823053No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22450.5362397768096002No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14790.35327333180463194No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12130.28973668118932966No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11270.26919475655430714No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9900.23647099289153864No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9590.22906634563937936No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9480.2264388901628067No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8050.19228196896736224No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7990.19084881143468624No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7560.18057784911717495No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7510.1793835511732783No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC6460.15430329435144843No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6370.15215355805243447No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6240.14904838339830315No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6130.14642092792173048No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6070.1449877703890545No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5940.14188259573492318No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5670.1354333868378812No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5580.13328365053886723No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5230.12492356493159062No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5190.12396812657647328No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5020.11990751356722464No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4970.11871321562332798No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4770.11393602384774135No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4740.11321944508140334No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4300.10270962317511273No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4290.10247076358633342No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4250.10151532523121608No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)