FastQCFastQC Report
Wed 8 May 2024
EGAF00007960118

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960118
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448131
Total Bases19.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21580.481555616549625No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20610.4599101601986919No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12480.2784899951130361No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11930.2662167982130225No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11900.26554735110938543No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10380.2316286978584387No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8480.18923038129475533No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8450.18856093419111822No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8430.1881146361220268No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7870.1756182901874675No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6880.15352653576744302No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6700.14950985314562037No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6520.14549317052379773No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6490.14482372342016062No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6450.14393112728197782No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5870.1309884832783271No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5730.12786439679468728No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5690.12697180065650446No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5650.12607920451832164No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5460.12183937286195332No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5430.12116992575831621No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5430.12116992575831621No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5330.11893843541285919No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5260.11737639217103926No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5260.11737639217103926No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5230.11670694506740217No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5210.11626064699831076No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4950.1104587721001225No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4630.10331800299466004No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4580.10220225782193154No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)