FastQCFastQC Report
Wed 8 May 2024
EGAF00007960120

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960120
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421716
Total Bases18.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20660.4899031575752402No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19190.45504557569549176No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11940.28312893037020176No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11220.26605582904134534No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11030.261550427301786No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10020.23760066015991807No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9200.21815629475760936No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7810.18519572413662275No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7200.17073101328856388No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7060.16741124358573067No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6870.16290584184617135No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6510.15436929118174317No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6370.15104952147891No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6090.14440998207324363No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5970.14156446518510088No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5880.13943032751899384No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5370.1273368807443872No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5300.12567699589297063No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5280.12520274307828017No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5230.12401711104155404No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5200.12330573181951834No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5180.12283147900482788No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5180.12283147900482788No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5010.11880033007995904No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5000.1185632036726138No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG4950.11737757163588766No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4640.1100266530081856No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4600.10907814737880468No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4400.10433561923190016No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4370.10362424000986446No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)