FastQCFastQC Report
Wed 8 May 2024
EGAF00007960121

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960121
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421716
Total Bases13 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45561.080347911864857No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36310.8610059850705214No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23080.5472877481527852No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15620.3703914482732455No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11910.2824175511481661No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11330.26866421952214287No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10860.2575192783769171No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10190.24163180908478693No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9420.2233730757192044No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8360.19823767654061028No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7540.1787933111383016No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7510.17808193191626592No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7330.17381365658405182No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6760.16029745136537385No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6670.1581633136992668No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6230.14772975177607678No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6220.14749262536873156No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6090.14440998207324363No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5990.14203871799979131No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5750.13634768422350585No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5730.13587343140881541No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5290.1254398694856254No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5280.12520274307828017No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5260.12472849026358972No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5230.12401711104155404No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5030.11927458289464948No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4820.1142949283403997No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4570.108366768156769No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4370.10362424000986446No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4240.1005415967143765No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)