FastQCFastQC Report
Wed 8 May 2024
EGAF00007960122

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960122
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434948
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13250.30463411718182404No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6520.14990297690758436No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5480.12599207261557704No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5480.12599207261557704No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5310.12208355941399891No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5310.12208355941399891No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4970.11426653301084266No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4660.10713924423149433No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)