FastQCFastQC Report
Wed 8 May 2024
EGAF00007960123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434948
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13170.30279481685166965No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11760.2703771485326982No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9130.20991015017887193No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8670.1993341732804841No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6960.1600191287234336No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5680.13059032344096305No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5610.12898093565207797No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5160.1186348712949594No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5100.11725539604734359No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4890.11242723268068827No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)