FastQCFastQC Report
Wed 8 May 2024
EGAF00007960124

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960124
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412946
Total Bases18.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13440.3254662837271701No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5850.1416650118901745No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5570.13488446431252513No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5520.13367365224508773No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5440.1317363529371879No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4990.12083904433025142No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4560.11042606055028986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)