FastQCFastQC Report
Wed 8 May 2024
EGAF00007960125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412946
Total Bases12.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40000.9686496539499111No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13000.31481113753372114No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11760.28478299826127385No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8880.21504022317688026No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6070.14699258498689902No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5490.1329471650046253No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5330.12907256638882567No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5300.1283460791483632No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4780.11575363364701438No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4230.1024347009052031No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)