FastQCFastQC Report
Wed 8 May 2024
EGAF00007960126

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960126
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441652
Total Bases19.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13480.30521768270040667No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6010.13607999058081927No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5990.13562714535426082No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5800.1313251157019554No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5730.12974015740900074No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5490.12430601469029916No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5230.11841902674503907No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4420.10007879506942116No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)