FastQCFastQC Report
Wed 8 May 2024
EGAF00007960127

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960127
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441652
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13610.30816117667303666No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12410.2809904630795287No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8930.20219539365835545No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8830.1999311675255631No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6430.1455897403385471No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6030.13653283580737774No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5910.13381576444802695No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5730.12974015740900074No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5420.1227210563973445No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4670.105739360401402No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)