FastQCFastQC Report
Wed 8 May 2024
EGAF00007960128

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960128
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419028
Total Bases18.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13040.3111963878308848No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5470.13054020256402912No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5390.12863102227058812No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5240.12505130922038624No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5190.1238580715369856No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5130.12242618631690483No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4740.11311893238637992No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4260.10166385062573384No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)