FastQCFastQC Report
Wed 8 May 2024
EGAF00007960129

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960129
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419028
Total Bases12.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37900.904474164017679No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12870.3071393797073227No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11830.2823200358925895No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9080.21669196330555474No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5660.13507450576095154No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5400.12886966980726824No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5270.1257672518304266No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5270.1257672518304266No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4910.11717594050994207No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4430.10572085874929599No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4250.10142520308905371No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)