FastQCFastQC Report
Sun 21 May 2023
EGAF00007960133

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960133
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438411
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA60261.3745093074763177No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41350.943178889215827No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA33610.7666322241002165No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA29510.6731126728115855No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18670.4258561030631074No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17210.3925540189456925No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG10290.23471126408780804No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC9970.22741217715796366No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9130.2082520739671222No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7860.17928382271430232No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7460.17015996405199688No Hit
GCACCGAAGCCTTCCAAACAGAGCAAGAAGA7440.1697037711188816No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7420.16924757818576633No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT7410.1690194817192087No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6660.15191224672738596No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6530.14894699266213668No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC6430.1466660279965603No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG6370.1452974491972145No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG6210.1416479057322923No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6150.14027932693294648No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA5980.13640168700146665No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC5900.13457691526900556No Hit
GGTCTGACCATTAGCGAAAAAATGCGCAAAC5720.13047117887096812No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA5690.12978688947129519No Hit
ATCAACCGTGCAGCGGACGATGCGGCTGGTC5680.12955879300473758No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5610.12796211773883412No Hit
GGCCTGACCATTAGCGAGAAGATGCGTAAAC5580.1272778283391612No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5550.12659353893948827No Hit
ATGGTGGTCCAGCACAATCTGCAGGCCATGA5530.126137346006373No Hit
ATGGTTGTCCAGCACAACATGCAGGCTGCGA5360.12225970607489318No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5190.11838206614341337No Hit
AAACGTATCAACAGCGCTGCCGACGACGCAG5170.1179258732102981No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4910.11199536507979956No Hit
GTCGTTCAGCACAATATGTCTGCCATGAACG4880.11131107568012664No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4870.111082979213569No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)