FastQCFastQC Report
Wed 8 May 2024
EGAF00007960136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441377
Total Bases19.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT28040.6352845753176989No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC26820.6076438056355451No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC24200.5482841199246903No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17890.40532243410961605No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG17860.40464274305185816No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC13470.30518128493328833No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG10820.24514190816467557No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC9690.21954021165579538No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9410.21319642845005515No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8290.1878212956270943No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7670.1737743471000981No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7640.17309465604234023No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG7570.17150871024090517No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7500.16992276443947013No Hit
TTTGGCAACAACCTGTACTGGCGGCACCGGCGGCGGGCTCAGGT6920.15678207065615107No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6630.15021172376449157No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC6360.14409450424467066No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG6150.1393366668403655No Hit
ATTGGCTGCTTGGGTAGCCAGTTCGTTCATGCGCTGCAGAATGC5960.13503195680789892No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5900.13367257469238317No Hit
GGTGGAAGCCTGATCCAGGCCTTTAATCTGTTTGCGCATCTTTT5760.13050068308951304No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5750.13027411940359376No Hit
ACGATCGGTGTCTTTGGAGTTAGTACCGTTCGCTGCCTGAACTG5710.1293678646599166No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC5630.12755535517256222No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5560.1259694093711272No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5530.1252897183133693No Hit
ATCACGGTCAGACTGCGCGTTGGTACCGTTTGCGGACTGAACTG5510.12483659094153071No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC5400.12234439039641848No Hit
AGTAGAGGCACGGTCCAGACCCTTGATTTGTTTGCGCATTTTTT5400.12234439039641848No Hit
GCTAGAGGCCTGAGACAGGCCGCGGATCTGCTTACGCATTTTTT5380.12189126302457988No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5020.11373497033148533No Hit
CAGGGAGTTAGTCAGAGAGGTCAGGCCGCTAGACGCGGTCTGCA4990.11305527927372744No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA4910.1112427697863731No Hit
GTTGTCAGACGCTTTGTTCAGGCCACGAATCTGGGAGCGCATTT4890.11078964241453451No Hit
ATCGCTGCTGTTGTTGGTAGAGTTCGCGGCCTGAACGGACAGTT4820.10920369661309946No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4640.10512555026655217No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4620.1046724228947136No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)