FastQCFastQC Report
Wed 8 May 2024
EGAF00007960137

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960137
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441377
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA59821.3553039691692137No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37940.8595826243777995No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA34140.7734884237284679No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA31050.7034802447794063No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18310.41483810891822637No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17870.40486930673777743No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC9840.2229386669445848No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG9680.21931364796987607No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9670.2190870842839568No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8080.18306345822278913No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7750.17558685658745246No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT7620.17264152867050164No Hit
GCACCGAAGCCTTCCAAACAGAGCAAGAAGA7510.1701493281253894No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7460.16901650969579293No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6700.15179766956592664No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6530.14794608690529865No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG6320.14318824950099346No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6280.14228199475731632No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC6250.14160230369955842No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6190.14024292158404267No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC6170.13978979421220408No Hit
GGCCTGACCATTAGCGAGAAGATGCGTAAAC6020.13639133892341468No Hit
ATCAACCGTGCAGCGGACGATGCGGCTGGTC6020.13639133892341468No Hit
GGTCTGACCATTAGCGAAAAAATGCGCAAAC5790.13118037414727093No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA5770.13072724677543235No Hit
ATGGTGGTCCAGCACAATCTGCAGGCCATGA5670.12846160991623942No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5590.12664910042888505No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA5570.12619597305704647No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5540.12551628199928858No Hit
ATGGTTGTCCAGCACAACATGCAGGCTGCGA5410.12257095408233779No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG5390.12211782671049919No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5210.1180396803639519No Hit
AAACGTATCAACAGCGCTGCCGACGACGCAG5070.11486778876108181No Hit
GTCGTTCAGCACAATATGTCTGCCATGAACG4990.11305527927372744No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4830.10943026029901877No Hit
ATGACCACTAAACTGATCAACCTGCCACACC4590.1039927318369557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)