FastQCFastQC Report
Wed 8 May 2024
EGAF00007960138

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960138
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences293100
Total Bases12.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17200.5868304332992152No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTACCG12800.4367110201296486No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11250.3838280450358239No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT9260.31593312862504264No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7040.24019106107130672No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6940.23677925622654383No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6790.23166154895939953No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC6210.21187308085977483No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6010.20504947117024908No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5900.2012964858410099No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5790.19754350051177072No Hit
AGTGGTGTGACCCAGGCTTACAACGGAGCCGGTATCGGAAGAAT5380.1835551006482429No Hit
TTCTTCGTCAGAGTCCTTCAGGTGACGGTAACCGTTTTTGCGGT5280.18014329580348004No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5070.172978505629478No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4820.1644489935175708No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4450.15182531559194815No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4400.1501194131695667No Hit
CTCACCTACAGAAACTTTAGTGTTGTTGCCTTTGTCACCGAACT4010.13681337427499146No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG3860.13169566700784716No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG3710.12657795974070282No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG3520.12009553053565336No Hit
GCCTTGACGAGATGCGTCGGAAATCTGTTTTTCTTCTTTGACCT3460.11804844762879564No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT3410.1163425452064142No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT3340.11395428181508017No Hit
GGTGTCAGAAACTTTCGGGACTTCCGGGCTTTTAGGAGCCTCCG3280.11190719890822244No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA3220.10986011600136471No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA3030.10337768679631525No Hit
TTTCAGCAGTTTGGCTGGCGGACGGTATTTGGTGCCGTTCGCCA3030.10337768679631525No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)