FastQCFastQC Report
Wed 8 May 2024
EGAF00007960139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences293100
Total Bases9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTATGCCGACTACTAGCACCGCTTCCCAGA17900.6107130672125555No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17160.5854657113613102No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16930.5776185602183556No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11670.3981576253838281No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA9380.3200272944387581No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8020.2736267485499829No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6750.23029682702149437No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6410.2186966905493006No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6250.21323780279767995No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6220.21221426134425111No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5960.2033435687478676No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5740.1958375980893893No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5730.19549641760491301No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5640.19242579324462641No Hit
AGCACCCCGCGTGCGGCTGTCACCCAGACGG5420.18491982258614809No Hit
GCGCTGGCTCGCCTGGACGCCGAACAGCGTG5290.18048447628795633No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5230.1784373933810986No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5200.17741385192766973No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4820.1644489935175708No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4790.1634254520641419No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4600.15694302285909245No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4190.14295462299556466No Hit
GTGCGTGCATCTAACCTGTCCGCCGAACAGC4020.13715455475946775No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA3890.13271920846127602No Hit
AACCTGACCGCGGAACTGGATAAAGTTAAAG3700.12623677925622656No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG3670.12521323780279767No Hit
CCGAAAGTGTCCGACACCCCGAAAGCCCCGG3480.1187308085977482No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC3280.11190719890822244No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT3270.11156601842374615No Hit
GATCCACTGTTCGACCAGGCGGTCCAGTTCG3200.10917775503241214No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG3090.10542476970317298No Hit
CAGACCCCAGAACAGTCTACCCCGTCTCGCA3080.10508358921869669No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG3040.10371886728079154No Hit
GAAGCTGACTGCCTGCACGAAAAATACGGTG2990.10201296485841009No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT2950.10064824292050495No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)