FastQCFastQC Report
Wed 8 May 2024
EGAF00007960142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences297152
Total Bases13 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16190.5448390049536938No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11830.3981127503769115No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT9640.32441309498169285No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7180.24162718070213224No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6920.2328774499246177No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC6230.2096570105535214No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6190.2083108981262115No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6140.2066282575920741No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6080.20460908895110919No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5970.20090727977600686No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTACCG5690.1914844927848374No Hit
AGTGGTGTGACCCAGGCTTACAACGGAGCCGGTATCGGAAGAAT5400.1817251776868404No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5230.1760041998707732No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5120.1723023906956709No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4820.16220654749084643No Hit
TTCTTCGTCAGAGTCCTTCAGGTGACGGTAACCGTTTTTGCGGT4800.16153349127719147No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4730.1591777945293991No Hit
GCCTTGACGAGATGCGTCGGAAATCTGTTTTTCTTCTTTGACCT4030.13562082705147535No Hit
CTCACCTACAGAAACTTTAGTGTTGTTGCCTTTGTCACCGAACT3990.1342747146241654No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG3990.1342747146241654No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG3770.12687109627396082No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG3770.12687109627396082No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT3420.11509261253499893No Hit
TGGGGTACCGGATACCTGTTTTTCCAGGCGACCCTGAACCGGAG3220.10836205039844928No Hit
GTCAAACGGCGGCGGTGCCAGTACTTCGCGGTTACCGTTGTGGC3180.10701593797113934No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA3150.1060063536506569No Hit
GGTGTCAGAAACTTTCGGGACTTCCGGGCTTTTAGGAGCCTCCG3090.10398718500969201No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT2990.10062190394141718No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)