FastQCFastQC Report
Wed 8 May 2024
EGAF00007960143

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960143
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences297152
Total Bases9.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16410.5522426233038984No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16000.5384449709239716No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12150.40888164979539093No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA11290.37994023260822746No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA9880.3324897695455525No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8220.2766261038121904No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6970.23456009045875514No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6340.21335881972862372No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6270.21100312298083135No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6140.2066282575920741No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5980.20124380788283436No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5910.19888811113504198No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5850.1968689424940771No Hit
AGCACCCCGCGTGCGGCTGTCACCCAGACGG5560.1871096273960801No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5530.18610004307559766No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5510.1854269868619427No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5460.18374434632780529No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5220.1756676717639457No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5160.17364850312298083No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4850.16321613181132888No Hit
GCGCTGGCTCGCCTGGACGCCGAACAGCGTG4650.15648556967477925No Hit
AACCTGACCGCGGAACTGGATAAAGTTAAAG4220.14201486108119749No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4110.1383130519060952No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4090.13763999569244023No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4050.1362938832651303No Hit
GTGCGTGCATCTAACCTGTCCGCCGAACAGC3960.13326513030368295No Hit
GATCCACTGTTCGACCAGGCGGTCCAGTTCG3390.11408302821451646No Hit
CAGACCCCAGAACAGTCTACCCCGTCTCGCA3350.11273691578720654No Hit
CCGAAAGTGTCCGACACCCCGAAAGCCCCGG3340.11240038768037908No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT3170.10667940986431186No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG3120.10499676933017445No Hit
GCCCCACCGTATACCAACGAACAGGCATACC3090.10398718500969201No Hit
CTGGAAGCTCAAAACGCACAGCTGGAAGCGG3050.10264107258238207No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC3050.10264107258238207No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG3020.10163148826189963No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)