FastQCFastQC Report
Wed 8 May 2024
EGAF00007960144

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960144
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences280118
Total Bases12.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16410.5858245453701654No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11520.41125525671324226No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTACCG10110.3609193268551111No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT8730.3116543742280039No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6770.2416838618010981No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6720.23989889974939133No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6060.21633740066686183No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5820.20776958281866928No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5510.19670281809808723No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5430.1938468788153564No Hit
AGTGGTGTGACCCAGGCTTACAACGGAGCCGGTATCGGAAGAAT5210.18599304578784656No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5000.17849620517067807No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4960.17706823552931264No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG4950.1767112431189713No Hit
TTCTTCGTCAGAGTCCTTCAGGTGACGGTAACCGTTTTTGCGGT4890.17456928865692314No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4260.1520787668054177No Hit
CTCACCTACAGAAACTTTAGTGTTGTTGCCTTTGTCACCGAACT3990.1424399717262011No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG3760.13422914628834992No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG3710.13244418423664314No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG3600.1285172677228882No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG3520.12566132844015737No Hit
GCCTTGACGAGATGCGTCGGAAATCTGTTTTTCTTCTTTGACCT3370.12030644228503702No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA3120.11138163202650311No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT3010.1074547155127482No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT2950.10531276105070007No Hit
GTAACCGGAGCAGTCAGTGAAGGTCAGCAGCTGACCGTAACGGC2950.10531276105070007No Hit
GGTGTCAGAAACTTTCGGGACTTCCGGGCTTTTAGGAGCCTCCG2920.104241783819676No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA2850.1017428369472865No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG2820.10067185971626243No Hit
TTTCAGCAGTTTGGCTGGCGGACGGTATTTGGTGCCGTTCGCCA2810.10031486730592107No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)