FastQCFastQC Report
Wed 8 May 2024
EGAF00007960145

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960145
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences280118
Total Bases8.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25090.8956939575464626No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16310.5822546212667519No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15340.5476263574636403No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA15090.5387015472051064No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12080.43124683169235817No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA8810.3145103135107347No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7270.2595334823181659No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6650.23739995287700186No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5770.2059846207669625No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5670.20241469666354892No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5520.1970598105084286No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5470.19527484845672183No Hit
AGCACCCCGCGTGCGGCTGTCACCCAGACGG5400.19277590158433233No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5320.18991996230160146No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5090.1817091368637503No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5010.17885319758101942No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5010.17885319758101942No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4930.17599725829828858No Hit
GCGCTGGCTCGCCTGGACGCCGAACAGCGTG4730.16885741009146146No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4380.15636267572951398No Hit
GTGCGTGCATCTAACCTGTCCGCCGAACAGC3970.14172598690551838No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC3880.1385130552124462No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG3740.13351516146766718No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA3470.12387636638845059No Hit
AACCTGACCGCGGAACTGGATAAAGTTAAAG3470.12387636638845059No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG3430.12244839674708516No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT3120.11138163202650311No Hit
CCGAAAGTGTCCGACACCCCGAAAGCCCCGG3030.10816870033343091No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG2970.10602674587138278No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC2900.10352779899899327No Hit
ATGCGTCGTAAATATGATGAATACGGCCGTC2810.10031486730592107No Hit
CTGGAAGCTCAAAACGCACAGCTGGAAGCGG2810.10031486730592107No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)