FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007960146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416396
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG17090.41042661312788786No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14950.359033227984899No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13960.3352577834561331No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12920.3102815589006619No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11670.2802620582330282No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10100.24255756539448026No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG10090.24231740938913918No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9230.2216639929298072No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8650.20773494462002517No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8210.19716808038501812No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTACCG7390.17747528794705042No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7130.1712312318081826No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG6610.15874311953044698No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6580.15802265151442377No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6140.14745578727941672No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6020.14457391521532387No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5770.13857001508179714No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5660.13592829902304537No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5650.1356881430177043No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA5600.13448736299099895No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5260.1263220588094026No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5150.12368034275065082No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTTCAC5080.12199925071326334No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4950.11887722264382944No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4920.11815675462780621No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4890.11743628661178301No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT4870.11695597460110088No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4810.11551503856905446No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG4730.1135937905263259No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG4650.11167254248359736No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4580.10999145044620987No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4440.10662926637143488No Hit
ATCGCTAGTCACAGTGATTTTCAGTTTACGGCCTGCGGAGGTGG4190.10062536623790815No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4180.10038521023256707No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)