FastQCFastQC Report
Wed 8 May 2024
EGAF00007960147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416396
Total Bases12.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18160.4361233056993823No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15490.3720016522733168No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13840.33237591139204026No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13670.3282932593012421No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13020.3126831189540726No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12310.29563204257485665No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11350.27257706606211396No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10550.2533645856348284No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10420.2502425575653945No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA10320.24784099751198377No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA10280.24688037349061953No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8520.20461291655059127No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8110.1947665203316074No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7240.17387294786693436No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7000.16810920373874869No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC6830.16402655164795052No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6270.15057781534885062No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6070.1457746952420292No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6060.14553453923668813No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5940.1426526671725953No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5920.14217235516191318No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5830.14001095111384354No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5820.1397707951085025No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC5810.13953063910316144No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5710.13712907904975072No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5320.127762994841449No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5070.12175909470792227No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG4970.11935753465451156No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4950.11887722264382944No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4750.11407410253700805No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT4730.1135937905263259No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4690.11263316650496162No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4670.11215285449427947No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4410.10590879835541168No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4400.10566864235007062No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4280.10278677028597778No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4260.10230645827529564No Hit
GCCGAAGTGCTGGCCCAAGTTGTTAAATCTC4220.10134583425393136No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)