FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007960148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392325
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15480.3945708277575989No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14170.3611801440132543No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13120.33441661887465746No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12200.31096667303893455No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12070.30765309373606065No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG9650.2459695405594851No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8850.2255782833110304No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8180.20850060536544957No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7750.19754030459440516No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7540.19218759956668577No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6540.1666985280061174No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6430.16389473013445485No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTACCG6340.1616007136940037No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6000.15293442936341045No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG5950.15165997578538204No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5660.14426814503281718No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5520.1406996750143376No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5290.13483718855540688No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5150.1312687185369273No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5090.12973937424329318No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTTCAC4940.12591601350920792No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG4860.12387688778436245No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG4790.12209265277512266No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA4760.12132798062830562No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4760.12132798062830562No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4730.12056330848148857No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4710.12005352705027718No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT4520.11521060345376918No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4450.1134263684445294No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG4400.11215191486650099No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4320.11011278914165551No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4300.10960300771044415No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4280.10909322627923278No Hit
GTTCAGTACATAGCAGCTGCTAGCCCACAGCAGCTGGGATTTGG4260.1085834448480214No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4190.10679920983878162No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC3950.1006818326642452No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)