FastQCFastQC Report
Wed 31 May 2023
EGAF00007960149

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960149
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392325
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36960.9420760848786083No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16260.4144523035748423No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14590.37188555406869306No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12620.3216720830943733No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12000.3058688587268209No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11820.30128082584591853No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11720.2987319186898617No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11440.29159497865290257No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA9660.24622443127509083No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA9430.24036194481616008No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9300.23704836551328617No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9240.23551902121965207No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7860.20034410246606765No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6460.1646594022812719No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6390.1628751672720321No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6340.1616007136940037No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC6190.15777735295991843No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5960.1519148665009877No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5680.14477792646402857No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC5640.1437583636016058No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5540.14120945644554897No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5480.13968011215191486No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5250.13381762569298414No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5090.12973937424329318No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5040.12846492066526477No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4890.12464155993117951No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG4880.12438666921557383No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4830.12311221563754542No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT4720.12030841776588287No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4610.11750461989422036No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4480.11419104059134647No Hit
GCCGAAGTGCTGGCCCAAGTTGTTAAATCTC4370.11138724271968395No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4350.11087746128847258No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4230.10781877270120437No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4160.10603453769196458No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4070.10374052125151341No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG3990.10170139552666793No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG3970.10119161409545659No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG3930.10017205123303383No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)