FastQCFastQC Report
Wed 8 May 2024
EGAF00007960150

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960150
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420225
Total Bases18.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16830.40049973228627517No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15210.3619489559164733No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13960.33220298649532987No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12890.3067404366708311No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11980.2850853709322387No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG10480.24939020762686656No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10270.24439288476411444No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8910.21202927003391042No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8010.19061217205068715No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7890.18775655898625737No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6960.16562555773692664No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6550.1558688797667916No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG6440.15325123445773098No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6420.15277529894699268No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5990.14254268546611934No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5960.1418287822000119No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5920.14087691117853532No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA5600.1332619430067226No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5390.1282646201439705No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5270.12540900707954072No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5250.12493307156880243No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTTCAC5120.12183949074900352No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5040.11993574870605034No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4950.11779403890772801No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4940.11755607115235885No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4910.11684216788625142No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG4900.11660420013088225No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG4860.11565232910940569No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG4780.1137485870664525No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4750.11303468380034504No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4700.11184484502349931No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4660.11089297400202272No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG4550.1082753286929621No Hit
ATCGCTAGTCACAGTGATTTTCAGTTTACGGCCTGCGGAGGTGG4460.10613361889463978No Hit
GTTCAGTACATAGCAGCTGCTAGCCCACAGCAGCTGGGATTTGG4450.10589565113927064No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4400.10470581236242489No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4230.10066036052114938No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)