FastQCFastQC Report
Wed 8 May 2024
EGAF00007960152

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960152
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396914
Total Bases17.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15450.3892530875706072No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13740.34617070700454No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13630.3433993257985357No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11770.2965377890424626No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11610.29250668910645633No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG10210.25723456466640127No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9630.24262182739837848No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8450.2128924653703321No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7650.1927369656903007No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7200.18139949712028297No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6430.16199982867825272No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6160.1551973475362421No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6030.151922078838237No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5980.15066236010823503No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG5880.1481429226482311No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5740.1446157102042256No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTACCG5610.1413404415062205No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5480.1380651728082154No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5390.13579767909421187No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5290.1332782416342079No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA5150.1297510291902024No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5090.12823936671420005No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTTCAC5000.12597187300019652No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4890.1232004917941922No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG4880.12294854804819179No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4870.12269660430219141No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4730.1191693918581859No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4620.11639801065218158No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4510.11362662944617725No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4480.11287079820817608No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG4400.11085524824017293No Hit
GTTCAGTACATAGCAGCTGCTAGCCCACAGCAGCTGGGATTTGG4370.11009941700217175No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4270.10757997954216783No Hit
ATCGCTAGTCACAGTGATTTTCAGTTTACGGCCTGCGGAGGTGG4120.10380082335216194No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG4000.10077749840015722No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG3980.10027361090815642No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)