FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007960153

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960153
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396914
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33960.8556009614173348No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15940.40159833112462645No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13980.35221735690854944No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13460.33911628211652906No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13040.32853464478451255No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11960.30132472021647005No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11480.2892314204084512No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11320.2852003204724449No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA10050.253203464730395No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9630.24262182739837848No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9120.22977269635235847No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA8540.21515995908433566No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7780.19601223438830578No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6510.16401537864625587No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6270.15796872874224643No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6200.15620512252024368No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6010.15141819134623621No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5970.15041041636223465No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC5970.15041041636223465No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC5690.14335599147422365No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5670.14285210398222284No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5610.1413404415062205No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5500.13856906030021615No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5470.137813229062215No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5280.13302629788820752No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5230.13176657915820555No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5020.1264757604921973No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4730.1191693918581859No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4710.11866550436618513No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4650.11715384189018277No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4560.11488634817617924No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT4490.11312274195417647No Hit
GCCGAAGTGCTGGCCCAAGTTGTTAAATCTC4390.11060330449417255No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4380.11035136074817216No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4370.11009941700217175No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4120.10380082335216194No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4000.10077749840015722No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)