FastQCFastQC Report
Wed 8 May 2024
EGAF00007960154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427264
Total Bases18.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT37990.8891458208508088No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT19530.45709444278010786No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG16040.37541192330736967No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG15120.3538795686039545No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT12790.2993465398442181No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT12310.28811226782504495No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG11700.2738353804673457No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT10200.2387282804074296No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG8920.2087702216896345No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8030.1879400089874176No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT7970.18653572498502097No Hit
CCACTGCGCGATGCCGAAGGCACCGGAGGAAGCATTCTTCGCGT7400.17319502696225283No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7250.16968431695626124No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6950.16266289694427802No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG6280.14698172558418215No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5900.13808792690233673No Hit
CCAGAAGGTACGGATCTGGTTTTTGCGTTTATCGTTCAGGGCAC5600.1310665068903535No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5280.12357699221090473No Hit
TTTCACGTGTTCATACTTAGAAACATCGAAACCGTCCTGTTTGG5130.12006628220491311No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5080.11889604553624925No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT4820.11281081485919713No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA4780.11187462552426602No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA4760.11140653085680047No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC4480.1048532055122828No Hit
ACCGCCCAGAGAATCAGCGATCAGATGGGAACGGTCGAACAGGT4480.1048532055122828No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC4450.10415106351108448No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4350.10181059017375675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)