FastQCFastQC Report
Wed 8 May 2024
EGAF00007960155

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960155
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427264
Total Bases13.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT38190.8938267675254643No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA20180.4723075194727382No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17260.4039656980227681No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG16570.3878164319952067No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC16180.3786885859796285No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG13970.32696412522468543No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT12620.2953677351707609No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT11910.278750374475734No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC10730.2511327890952666No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC10150.23755804373876574No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8280.19379119233073697No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC8080.1891102456560815No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7950.1860676303175554No Hit
GACGTCGGTGGCGAAGGTGCAGAAAAAATGT7680.17974835230677053No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7570.17717383163571002No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7440.17413121629718395No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6420.15025838825644097No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6390.14955624625524266No Hit
CTGCACGACGACGCTAACTTTCTGGAACATG5970.13972625823846616No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5690.13317293289394846No Hit
ACCGACGTTCTGGAATCCGCGACTGCAGACA5660.13247079089275016No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5100.1193641402037148No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA5100.1193641402037148No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5050.11819390353505094No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA4970.11632152486518872No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT4970.11632152486518872No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC4860.11374700419412823No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG4640.10859796285200718No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA4450.10415106351108448No Hit
ACTCGTCTGGAAAACATCAAAACCGACCGTA4400.10298082684242062No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT4280.10017225883762733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)