FastQCFastQC Report
Wed 8 May 2024
EGAF00007960156

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960156
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403443
Total Bases17.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT35540.8809175025964014No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT17840.4421938167225606No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG15180.37626133059688727No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG13200.3271837657364237No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT11780.29198672427083877No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT11660.2890123264005076No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG11440.28355926363823386No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT9140.226549971123554No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8030.19903679082299114No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG8000.19829319135540835No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT7490.18565200040650104No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7190.17821600573067323No Hit
CCACTGCGCGATGCCGAAGGCACCGGAGGAAGCATTCTTCGCGT6970.1727629429683995No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6760.16755774669532003No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5560.13781376799200878No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5450.1350872366108719No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5330.13211283874054078No Hit
CCAGAAGGTACGGATCTGGTTTTTGCGTTTATCGTTCAGGGCAC5280.1308735062945695No Hit
TTTCACGTGTTCATACTTAGAAACATCGAAACCGTCCTGTTTGG4980.1234375116187417No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4970.12318964512954741No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT4660.11550578396452534No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA4510.11178778662661144No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA4300.10658259035353197No Hit
ACCGCCCAGAGAATCAGCGATCAGATGGGAACGGTCGAACAGGT4170.10336032599400659No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC4160.10311245950481232No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4040.1001380616344812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)