FastQCFastQC Report
Wed 8 May 2024
EGAF00007960159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433378
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT39400.9091370581801569No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA20290.46818251041815695No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18330.42295640295538767No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG17100.3945747130680376No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC15550.35880916890105174No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG13720.31658275223938454No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT13110.3025072800188288No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT12790.29512342573919303No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC10480.24182122765807218No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC9590.22128488294283513No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8610.19867182921145052No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8520.19659512019530295No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT8340.1924417021630078No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC7700.17767399360373623No Hit
GACGTCGGTGGCGAAGGTGCAGAAAAAATGT7540.17398206646391834No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7360.1698286484316232No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6160.14213919488298898No Hit
CTGCACGACGACGCTAACTTTCTGGAACATG6100.1407547222055573No Hit
ACCGACGTTCTGGAATCCGCGACTGCAGACA5960.1375242859582166No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5860.13521683149583044No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5710.13175564980225116No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5600.12921744989362635No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5300.12229508650646778No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA5230.12067986838279747No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT5080.1172186866892182No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5060.11675719579674095No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4930.11375750499563891No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG4580.10568141437728726No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4520.10429694169985557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)