FastQCFastQC Report
Wed 8 May 2024
EGAF00007960169

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960169
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438652
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49271.1232138460556433No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA34630.7894640854253485No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC33090.7543565286377356No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG26370.601159917200879No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG24440.5571614856423771No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20450.4662009976017435No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG18820.42904170048238693No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17040.38846283614345767No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG16440.3747845672651669No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15800.3601944137949901No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC15180.3460602026207563No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14840.3383091835897249No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG13050.2975023481028241No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12060.27493320445364433No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10190.23230259978297146No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9740.22204389812425337No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8600.19605518725550097No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8550.1949153315156434No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8110.18488460100489684No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8100.1846566298569253No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7700.1755377839380648No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7320.1668748803151473No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7270.16573502457528977No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7160.1632273419476031No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7100.16185951505977406No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6770.15433646717671412No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6710.15296864028888504No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6390.14567356355379663No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6290.1433938520740815No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5920.13495891959913553No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5520.12584007368027503No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5440.12401630449650292No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5250.11968485268504418No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5190.1183170257972151No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5190.1183170257972151No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5170.11786108350127207No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5130.11694919890938603No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4990.11375760283778484No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA4820.10988209332226913No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4500.10258701658718072No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)