FastQCFastQC Report
Wed 31 May 2023
EGAF00007960173

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960173
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443821
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48411.0907550566557238No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA35150.7919859583030096No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC33840.7624695541671079No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG26700.6015938858233386No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG26420.5952850360843673No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20280.4569409739512101No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG19300.43485999986481033No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16760.37762972008985607No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG16620.3744752952203704No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15840.3569006423760931No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15650.3526196371960768No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14550.3278348703644037No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12880.29020708799268174No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12610.28412355431581654No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9910.22328821754716427No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9470.21337431081449504No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8860.19963003102602175No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8630.194447761597581No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8410.18949080823124637No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8200.18475917092701788No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7960.179351585436471No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7900.1779996890638343No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7600.17124020720065072No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7350.16560730564799772No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7260.16357946108904264No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6740.15186302585952444No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6480.14600480824476536No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6410.1444275958100225No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6060.13654153363630833No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5610.12640231084153297No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5530.124599782344684No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5530.124599782344684No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5350.12054409322677385No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5150.11603777198465146No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5120.11536182379833311No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4960.1117567668046352No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4870.10972892224568012No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4840.10905297405936178No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA4690.10567323312776998No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4540.1022934921961782No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4510.10161754400985983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)