FastQCFastQC Report
Wed 8 May 2024
EGAF00007960175

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960175
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420880
Total Bases13 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46981.1162326553887094No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38660.918551606158525No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA34500.8197110815434329No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30650.7282360767914845No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24200.5749857441551036No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG23290.5533643793955522No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18440.4381296331495913No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17370.41270670975099794No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16740.39773807260977No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15710.37326553887093705No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14620.34736742064246345No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14190.337150731800038No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14110.335249952480517No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11860.2817905341189888No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11800.28036494962934805No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9760.23189507698156248No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9560.22714312868275993No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8170.1941170880060825No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7960.18912754229233986No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7680.18247481467401633No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7480.17772286637521384No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7170.17035734651206993No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6970.16560539821326745No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6960.1653678007983273No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6740.16014065766964455No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6150.14612241018817715No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6010.14279604637901538No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5800.13780650066527275No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5770.13709370842045238No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5640.13400494202623076No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5480.13020338338718876No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5210.12378825318380537No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5130.12188747386428435No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4970.11808591522524237No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4830.11475955141608059No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4690.11143318760691884No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4610.10953240828739783No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA4550.10810682379775707No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4370.10383007032883482No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4270.10145409617943357No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)